Polymeric multilayered capsules (PMCs) have found great applicability in various applications due to their versatile wall functions, capability to load active substances and unique permeability. PMCs are based on the sequential adsorption of polyelectrolytes by the layer-by-layer (LbL) technique, followed by the elimination or liquefaction of the template core. The principle of the strategy is to physically isolate a wide range of materials, including cells, proteins and/or therapeutic molecules, from the outside environment. This selective permeability is mediated by the LbL membrane, which allows the diffusion of nutrients, oxygen, waste products and metabolites, while avoiding the entrance of high molecular weight immune system components. However, when living cells are encapsulated, the existing methodologies still have to address a main issue related to the fact that most cells are anchorage-dependent and, thus, cannot grow in suspension. Therefore, although the liquified environment ensures the diffusion of essential molecules for cell survival, on the other hand liquified environments are deprived from cell adhesion sites. To overcome this main drawback, we hypothesized that liquified and flexible capsules combined with encapsulated microparticles to provide cell adhesion sites are a promising attempt. To test this hypothesis, hierarchical structures featuring (i) an external shell combining three polyelectrolytes, namely poly(L-lysine) (PLL), alginate (ALG) and chitosan (CHT) prepared by LbL, and (ii) incorporating surface functionalized poly(L-lactic) acid (PLLA) microparticles were developed. The construction of the multilayered structure by quartz-crystal microbalance with dissipation monitoring was monitored. Additionally, the mechanical performance of capsules was evaluated. Results show that the combined assembly of PLL, ALG and CHT resulted in a more resistant and thicker film with an exponential build-up growth regime compared to the assembly without PLL. The ability of the optimized capsules to support cell survival was assessed. L929 cells were encapsulated and cell viability and proliferation assays were performed. Results show that capsules containing PLLA microparticles revealed an enhanced metabolic activity, biocompatibility and proliferation. We believe that the developed approach will offer new possibilities to the existing bioencapsulation strategies. Different microparticles loaded with growth factors and other biomolecules of interest can be encapsulated in order to customize and control different cellular functions, such as differentiation of stem cells into the desired lineage, according to the target application field.